CPLP-TB (link to publication) main goal is to facilitate exchange of molecular epidemiological data and thus enable the tracking of important MTB clones across the Lusophone space
GMTV (link to publication) integrates clinical, epidemiological and microbiological description with genome variations based on WGS data
inTB (link to publication) is a web-based system for storage and analysis of clinical, socio-demographic and molecular typing data
Mbovis.org (link to publication) hosts the Mycobacterium bovis Spoligotype Database
MtbRegList (link to publication) is a database dedicated to the analysis of transcriptional regulation in Mycobacterium tuberculosis
Mycobrowser (link to publication) is a comprehensive genomic and proteomic data repository for pathogenic mycobacteria
MycoDB.es (link to publication) is the Spanish Database of Animal Mycobacterosis
MIRU-VNTRplus (link to publication) is a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
ReSeqTB (link to publication) is a collaborative effort for a centralized worldwide TB relational sequencing data platform
SpolDB4 (link to publication) is the the fourth international spoligotyping database for MTBC classification, population genetics and epidemiology
SITVITWEB (link to publication) is the fifth international multimarker database for studying MTBC genetic diversity and molecular epidemiology
SITVIT2 (link to publication) is the sixth international multimarker database for studying MTBC genetic diversity and molecular epidemiology
tbvar (link to publication) is the Mycobacterium tuberculosis variome resource
TB database (link to publication) is an integrated platform for tuberculosis research
TB Portals (link to publication) is an open-access, web-based platform for global drug-resistant-tuberculosis data sharing and analysis
TB DEPOT (link to publication) is a multi-domain tuberculosis data analysis resource
CASTB (link to publication) is a total solution for epidemiological and genomic analysis of Mycobacterium tuberculosis complex
COMBAT-TB-NeoDB (link to publication) is a comprehensive bacterial analytical toolkit for TB Research (and related projects)
CRISPRbuilder-TB (link to publication) reconstructs the whole CRISPR locus from a Mycobacterium tuberculosis complex genome, by using SRA WGS data
Galru (link to publication) identifies Mycobacterium tuberculosis spoligotyping from uncorrected long reads
KvarQ (link to publication) performs targeted and direct variant calling in FastQ reads of bacterial genomes
MIRU-profiler (link to publication) performs digital 24-loci MIRU-VNTR typing for Mycobacterium tuberculosis
MIRUReader (link to publication) identifies 24-locus MIRU-VNTR for Mycobacterium tuberculosis complex directly from long reads
MixInfect (link to publication) detects mixed infections in TB
MTBseq (link to publication) is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from WGS TB data
PhyTB (link to publication) is a web-tool to assist phylogenetic tree visualisation and identification of M. tuberculosis clade-informative polymorphism
PolyTB (link to publication) is a genomic variation map for Mycobacterium tuberculosis
SecProMTB (link to publication) is a Support Vector Machine-Based classifier for secretory proteins using imbalanced data sets applied to Mycobacterium tuberculosis
SNP-IT (link to publication) is a Whole-genome SNP based identification tool for members of the Mycobacterium tuberculosis complex
StackTB (link to publication) is a package for classifying the lineage of Mycobacterium tuberculosis strains from MIRU-VNTR data
SpolLineages (link to publication) predicts Mycobacterium tuberculosis complex spoligotype families
SpolPred (link to publication) predicts Mycobacterium tuberculosis spoligotypes from short genomic sequences
SpolSimilaritySearch (link to publication) is a web tool allowing to search for similar spoligotyping profiles in function of a given query
SpolTools (link to publication) are online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex
SpoTyping (link to publication) provides fast and accurate in silico Mycobacterium spoligotyping from sequence reads
TB-Lineage (link to publication) determines the major genetic lineage of a Mycobacterium tuberculosis isolate through various methods
TBminer (link to publication) predicts MTBC lineages from spoligotypes and MIRU-VNTR profiles basing on Machine Learning
TGS-TB (link to publication) provides total genotyping solution for MTB using short-read Whole Genome Sequencing
UVP (link to publication) is a unified analysis variant pipeline to identify variants and assign lineage from MTBC sequence data
binoSNP (link to publication) detects low-frequency SNPs in NGS data of Mycobacterium tuberculosis complex strains
DeepAMR (link to publication) predicts co-occurrent resistance of Mycobacterium tuberculosis
MUBII-TB-DB (link to publication) is a database of mutations associated with antibiotic resistance in Mycobacterium tuberculosis
Mykrobe predictor (link to publication) predicts antibiotic-resistance from genome sequence data for S. aureus and M. tuberculosis
PhyResSE (link to publication) is a a web tool delineating Mycobacterium tuberculosis antibiotic resistance and lineage from WGS data
Resistance Sniffer (link to publication) predicts drug resistance in Mtb isolates using complete or partial genome datasets in different file formats
TBDReaMDB (link to publication) is a comprehensive database listing mutations associated with TB drug resistance
TBProfiler (link to publication) is a pipeline allowing to analyse M. tuberculosis WGS data to predict lineage and drug resistance
WHO provides global report and other important information on TB
E-DETECT TB (link to publication) is a research consortium for the early detection and integrated management of TB in Europe
The Union works towards the global elimination of TB
CDC provides TB reports and data for the United States of America
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